Lionel

Lionel

Ecologist with quasi-pathological addiction for data

Posts by Tag

This page displays the site’s tags in alphabetical order and shows how many posts there are per tag, makes anchor links for each tag, then outputs posts by tag in reverse chronological order.

Posts by tag

Advanced

27 Nov 12: Assigning Names to object within a Loop in R

Advice

10 Apr 17: About my PhD defense in Germany

Advocacy

10 Jan 15: What roles should ecologist have in the society?

BEF

16 Nov 14: Talk at the meeting of the entomological society of Thuringia
12 Nov 14: Biodiversity and Ecosystem Function research: Part 1 setting the scene
03 Nov 14: Lecture on Biodiversity Ecosystem function

BES

12 Dec 14: Summary and thoughts of the BES/SFE meeting

Basic

07 Dec 12: Correlation and Linear Regression in R
21 Nov 12: Manipulating data frame in R
13 Nov 12: R at your fingertips

Bayesian

08 Dec 16: Crossed and Nested hierarchical models with STAN and R
10 Nov 16: Hierarchical models with RStan (Part 1)

Biodiversity

14 Aug 16: Simulating local community dynamics under ecological drift
18 Jul 16: Exploring the diversity of Life using Rvest and the Catalog of Life
25 May 16: Discussion on Biodiversity trends in the Anthropocene
10 Jan 15: What roles should ecologist have in the society?
12 Dec 14: Summary and thoughts of the BES/SFE meeting
12 Nov 14: Biodiversity and Ecosystem Function research: Part 1 setting the scene
03 Aug 13: Why should we care about Biodiversity?
23 Nov 12: Threat to biodiversity (about butterfly, polar bears and Brad Pitt);

Biology

03 Aug 13: Why should we care about Biodiversity?

Conference

14 Sep 16: 150 years of ecology: lessons for the future
01 Oct 15: Ecology at the Interface in Rome
16 Sep 14: First scientific conference; Inspiration, Meetings and Walking

Conservation

16 Sep 14: First scientific conference; Inspiration, Meetings and Walking
23 Nov 12: Threat to biodiversity (about butterfly, polar bears and Brad Pitt);
20 Nov 12: The United Nations and the safeguarding of the environment (Basic)

Convention

20 Nov 12: The United Nations and the safeguarding of the environment (Basic)

Defense

10 Apr 17: About my PhD defense in Germany

Ecolog

24 Jan 17: Prediction in ecology -implementing a priority.
02 Dec 13: First Lecture ever

Entomologen

16 Nov 14: Talk at the meeting of the entomological society of Thuringia

FD

27 Apr 15: Exploration of Functional Diversity indices using Shiny

First

16 Sep 14: First scientific conference; Inspiration, Meetings and Walking

Fun

23 Nov 12: Threat to biodiversity (about butterfly, polar bears and Brad Pitt);

GLM

17 May 17: Adding standard errors for interaction terms
22 Jul 15: Count data: To Log or Not To Log
16 Apr 14: Checking (G)LM model assumptions in R
02 Dec 13: First Lecture ever
20 Jul 13: Generalized Linear Modelling in R (part 1)

GLMM

17 Jun 15: Confidence Intervals for prediction in GLMMs
26 Feb 15: Generating ANOVA-like table from GLMM using parametric bootstrap
13 Jul 14: Using bootMer to do model comparison in R
12 Mar 14: Generalized Linear Mixed Models in Ecology and in R
02 Mar 14: Computing R square for Generalized Linear Mixed Models in R

Genre

21 Feb 14: Science vs Obscurantisme

IF

20 May 13: Impact Factors in Science: time to leave them behind

IPBES

30 Jan 13: IPBES is on its way

Informatics

14 Nov 12: Perl Basics

Internet

10 Dec 13: Libertés individuelles et internet

Introduction

24 Jan 14: Bringing together R and LaTex

LM

03 Oct 17: Interpreting three-way interactions in R
17 May 17: Adding standard errors for interaction terms
08 Oct 15: Plotting regression curves with confidence intervals for LM, GLM and GLMM in R
22 Jul 15: Count data: To Log or Not To Log
25 Mar 15: A function to help graphical model checks of lm and ANOVA
13 Jan 15: Using and interpreting different contrasts in linear models in R
23 Nov 14: Interpreting regression coefficient in R
16 Apr 14: Checking (G)LM model assumptions in R

LRT

13 Jul 14: Using bootMer to do model comparison in R

Lecture

03 Nov 14: Lecture on Biodiversity Ecosystem function

MySQL

02 Feb 13: Bringing the powers of SQL to R;

NLS

25 Aug 13: Non-linear regression in R

Nerdy

18 Dec 16: Spatial Dynamic in a Host-Parasitoid system
18 Apr 14: Fonctions récursives (avec R)

Neutral theory

14 Aug 16: Simulating local community dynamics under ecological drift

Perl

01 Jun 14: Regular expression and associated functions in R
14 Nov 12: Perl Basics

PhD

10 Apr 17: About my PhD defense in Germany

Probability

20 Dec 13: Simulating dice throws in R

R

29 Jul 20: Fitting scale-dependent landscape effect with greta
16 Mar 18: Recurrent themes in my work: covariance
26 Nov 17: Simulating SEMs: part 2 extensions
11 Nov 17: Categorical random effects with lme4
03 Oct 17: Interpreting three-way interactions in R
06 Aug 17: Introduction to point pattern analysis for ecologists
19 Jun 17: Adding group-level predictors in GLMM using lme4
17 May 17: Adding standard errors for interaction terms
08 May 17: Simulating SEMs for piecewiseSEM: part 1 the basics
03 Apr 17: Interpreting random effects in linear mixed-effect models
05 Feb 17: Patterns across 50 years of French presidential election
08 Dec 16: Crossed and Nested hierarchical models with STAN and R
10 Nov 16: Hierarchical models with RStan (Part 1)
04 Sep 16: Shiny and Leaflet for Visualization Awards
14 Aug 16: Simulating local community dynamics under ecological drift
18 Jul 16: Exploring the diversity of Life using Rvest and the Catalog of Life
11 Jun 16: Exploring Spatial Patterns and Coexistance
08 Oct 15: Plotting regression curves with confidence intervals for LM, GLM and GLMM in R
31 Aug 15: Two little annoying stats detail
22 Jul 15: Count data: To Log or Not To Log
17 Jun 15: Confidence Intervals for prediction in GLMMs
27 Apr 15: Exploration of Functional Diversity indices using Shiny
25 Mar 15: A function to help graphical model checks of lm and ANOVA
26 Feb 15: Generating ANOVA-like table from GLMM using parametric bootstrap
13 Jan 15: Using and interpreting different contrasts in linear models in R
23 Nov 14: Interpreting regression coefficient in R
11 Oct 14: DataFrame manipulation in R from basics to dplyr
10 Aug 14: Ploting SEMs in R using semPlot
13 Jul 14: Using bootMer to do model comparison in R
01 Jun 14: Regular expression and associated functions in R
05 May 14: Importing 100 years of climate change into R
16 Apr 14: Checking (G)LM model assumptions in R
08 Apr 14: Interpreting interaction coefficient in R (Part1 lm) UPDATED
12 Mar 14: Generalized Linear Mixed Models in Ecology and in R
02 Mar 14: Computing R square for Generalized Linear Mixed Models in R
24 Feb 14: Adding color to R plot: a function
20 Dec 13: Simulating dice throws in R
25 Oct 13: Manipulation of the legend in ggplot2 (R)
25 Aug 13: Non-linear regression in R
20 Jul 13: Generalized Linear Modelling in R (part 1)
13 Jun 13: Advanced settings in ggplot2 (R)
31 May 13: Using the rasterVis package for raster plotting (in R)
15 May 13: Drawing lines in raster cells (in R), with application to species distribution mapping
13 Apr 13: Ploting raster stacks (in R)
30 Mar 13: Making maps in R using ggplot,
11 Mar 13: Taking control of the legend in raster (in R)
24 Feb 13: Using Spatial Data in R;
13 Feb 13: The day I stoped using for loops (in R);
02 Feb 13: Bringing the powers of SQL to R;
24 Jan 13: Making Graphs using ggplot2 in R:
07 Dec 12: Correlation and Linear Regression in R
27 Nov 12: Assigning Names to object within a Loop in R
21 Nov 12: Manipulating data frame in R
14 Nov 12: The 6 functions that save your life (in R)
13 Nov 12: R at your fingertips

Random-effect

03 Apr 17: Interpreting random effects in linear mixed-effect models

SEMs

26 Nov 17: Simulating SEMs: part 2 extensions
10 Jul 17: Cause, mechanism and prediction in ecology
08 May 17: Simulating SEMs for piecewiseSEM: part 1 the basics
10 Aug 14: Ploting SEMs in R using semPlot

SFE

12 Dec 14: Summary and thoughts of the BES/SFE meeting

STAN

08 Dec 16: Crossed and Nested hierarchical models with STAN and R
10 Nov 16: Hierarchical models with RStan (Part 1)

Simulation

26 Nov 17: Simulating SEMs: part 2 extensions
08 May 17: Simulating SEMs for piecewiseSEM: part 1 the basics
18 Dec 16: Spatial Dynamic in a Host-Parasitoid system

Society

10 Jan 15: What roles should ecologist have in the society?

Spat

30 Mar 13: Making maps in R using ggplot,

Spatial Data

06 Aug 17: Introduction to point pattern analysis for ecologists
24 Feb 13: Using Spatial Data in R;

Stat

02 Dec 13: First Lecture ever

Statistics

06 Aug 17: Introduction to point pattern analysis for ecologists
17 May 17: Adding standard errors for interaction terms
17 Apr 17: How not to control for multiple testing
19 Feb 17: Making a case for hierarchical generalized models
08 Dec 16: Crossed and Nested hierarchical models with STAN and R
10 Nov 16: Hierarchical models with RStan (Part 1)
08 Oct 15: Plotting regression curves with confidence intervals for LM, GLM and GLMM in R
22 Jul 15: Count data: To Log or Not To Log
07 Dec 12: Correlation and Linear Regression in R
27 Nov 12: Assigning Names to object within a Loop in R
21 Nov 12: Manipulating data frame in R
14 Nov 12: The 6 functions that save your life (in R)
13 Nov 12: R at your fingertips

Sweave

24 Jan 14: Bringing together R and LaTex

UN

30 Jan 13: IPBES is on its way
20 Nov 12: The United Nations and the safeguarding of the environment (Basic)

birthday

01 Nov 14: Happy birthday biologyforfun

bootstrap

26 Feb 15: Generating ANOVA-like table from GLMM using parametric bootstrap

causality

10 Jul 17: Cause, mechanism and prediction in ecology

communication

18 Oct 17: Mind the gap: when the news article run ahead of the science

contrasts

13 Jan 15: Using and interpreting different contrasts in linear models in R

covariance

16 Mar 18: Recurrent themes in my work: covariance

data

10 Nov 13: Will the next generation ecologists be parasites?

dplyr

11 Oct 14: DataFrame manipulation in R from basics to dplyr

ecology

29 Jul 20: Fitting scale-dependent landscape effect with greta
16 Mar 18: Recurrent themes in my work: covariance
18 Oct 17: Mind the gap: when the news article run ahead of the science
10 Jul 17: Cause, mechanism and prediction in ecology
17 Apr 17: How not to control for multiple testing
19 Feb 17: Making a case for hierarchical generalized models
24 Jan 17: Prediction in ecology -implementing a priority.
18 Dec 16: Spatial Dynamic in a Host-Parasitoid system
14 Sep 16: 150 years of ecology: lessons for the future
04 Sep 16: Shiny and Leaflet for Visualization Awards
14 Aug 16: Simulating local community dynamics under ecological drift
18 Jul 16: Exploring the diversity of Life using Rvest and the Catalog of Life
11 Jun 16: Exploring Spatial Patterns and Coexistance
25 May 16: Discussion on Biodiversity trends in the Anthropocene
01 Oct 15: Ecology at the Interface in Rome
22 Jul 15: Count data: To Log or Not To Log
27 Apr 15: Exploration of Functional Diversity indices using Shiny
20 Feb 15: Evenness effect on ecosystem functioning
10 Jan 15: What roles should ecologist have in the society?
12 Nov 14: Biodiversity and Ecosystem Function research: Part 1 setting the scene
10 Nov 13: Will the next generation ecologists be parasites?

ecosystem

20 Feb 15: Evenness effect on ecosystem functioning

education

30 May 17: On the price of (my) higher education

erasmus

30 May 17: On the price of (my) higher education

europe

17 May 14: Pourquoi je vais aller voter le 25 mai

evenness

20 Feb 15: Evenness effect on ecosystem functioning

fees

30 May 17: On the price of (my) higher education

france

05 Feb 17: Patterns across 50 years of French presidential election

french

05 Feb 17: Tendances des élections présidentielles francaises des 50 dernières années

ggplot

13 Jun 13: Advanced settings in ggplot2 (R)
30 Mar 13: Making maps in R using ggplot,
24 Jan 13: Making Graphs using ggplot2 in R:

ggplot2

25 Oct 13: Manipulation of the legend in ggplot2 (R)

grant

30 May 17: On the price of (my) higher education

insects

18 Oct 17: Mind the gap: when the news article run ahead of the science

interaction

03 Oct 17: Interpreting three-way interactions in R
08 Apr 14: Interpreting interaction coefficient in R (Part1 lm) UPDATED

journalism

18 Oct 17: Mind the gap: when the news article run ahead of the science

lme4

11 Nov 17: Categorical random effects with lme4
19 Jun 17: Adding group-level predictors in GLMM using lme4
03 Apr 17: Interpreting random effects in linear mixed-effect models
08 Oct 15: Plotting regression curves with confidence intervals for LM, GLM and GLMM in R
31 Aug 15: Two little annoying stats detail

manifeste

10 Dec 13: Libertés individuelles et internet

model check

25 Mar 15: A function to help graphical model checks of lm and ANOVA

multilevel

19 Jun 17: Adding group-level predictors in GLMM using lme4

multiple testing

17 Apr 17: How not to control for multiple testing

nR

19 Jun 17: Adding group-level predictors in GLMM using lme4

plot

24 Feb 14: Adding color to R plot: a function

prediction

10 Jul 17: Cause, mechanism and prediction in ecology
24 Jan 17: Prediction in ecology -implementing a priority.

rJava

09 Feb 14: Installing rJava in R>=3.0

raster

31 May 13: Using the rasterVis package for raster plotting (in R)
15 May 13: Drawing lines in raster cells (in R), with application to species distribution mapping
11 Mar 13: Taking control of the legend in raster (in R)

residuals

31 Aug 15: Two little annoying stats detail

rome

01 Oct 15: Ecology at the Interface in Rome

rvest

18 Jul 16: Exploring the diversity of Life using Rvest and the Catalog of Life

science

24 Jan 17: Prediction in ecology -implementing a priority.
10 Nov 13: Will the next generation ecologists be parasites?

spatial

29 Jul 20: Fitting scale-dependent landscape effect with greta

time-series

05 May 14: Importing 100 years of climate change into R

ubuntu

09 Feb 14: Installing rJava in R>=3.0

élection

05 Feb 17: Tendances des élections présidentielles francaises des 50 dernières années
05 Feb 17: Patterns across 50 years of French presidential election
17 May 14: Pourquoi je vais aller voter le 25 mai